isONclust3
Rust implementation of a novel de novo clustering algorithm. isONclust3 is a tool for clustering either PacBio Iso-Seq reads, or Oxford Nanopore reads into clusters, where each cluster represents all reads that came from a gene family. Output is a tsv file with each read assigned to a cluster-ID and a folder 'fastq' containing one fastq file per cluster generated. Detailed information is available in the isONclust3 paper.
- Latest release
- Feb 07, 2025
- Releases
- 3
- Known CVEs
- 0
- First release
- Nov 26, 2024
- License
- MIT
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- Total releases
- 3
- Last 12 months
- 0
- Cadence
- ~36 days
- Dependencies
- 9
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last 12 monthsRelease mix
- minor 1
- patch 1
3
releases
Dependencies
Depends on
0.3.0-
bio
^1
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bio-seq
^0.10.0
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clap
^4.4.3
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clap-cargo
^0.12.0
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memory-stats
^1.0.0
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minimizer-iter
^1.2.1
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nohash-hasher
^0.2.0
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rayon
^1.7
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rustc-hash
^1.1.0
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